Set up native R package support

Environment tool

Use the Environment tool to install and manage R packages (install.packages, remove.packages, and available.packages commands supported).

This method records the applied changes to the environment.yml file of the respective notebook. As a result, the new configuration is automatically applied when opening the notebook.

.Rprofile files

To configure a custom R package repository, add an .Rprofile file to the notebook's Attached data or the home directory in a custom agent image (applicable for Datalore On-Premises).

If you want to use R Studio Package Manager, you can set it up it there (or in other supported places if you use a custom docker image). If no CRAN url is specified, https://cloud.r-project.org is used by default.

The .Rprofile file will be respected when installing environment for the notebook.

Custom R environment without Anaconda (for Datalore On-Premises users)

This custom environment sets a non-conda default environment with the R kernel.

FROM jetbrains/datalore-agent:2025.2
ENV CUSTOM_ENV_NAME myenv
USER root
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install -y -q --no-install-recommends libzmq3-dev libcurl4-openssl-dev libssl-dev r-base make g++ libharfbuzz-dev libfribidi-dev libtiff-dev apt-file && \
Rscript -e "install.packages(c('repr', 'IRdisplay', 'IRkernel'), type = 'source')" && \
rm -rf /var/lib/apt/lists/* && apt-get clean
RUN chown -R datalore:datalore /home/datalore && \
     chown -R datalore:datalore /usr/local/lib/R/site-library
USER datalore
RUN mkdir -p /opt/python/envs/$CUSTOM_ENV_NAME
RUN /opt/python/bin/python -m venv /opt/python/envs/$CUSTOM_ENV_NAME
RUN /opt/python/envs/$CUSTOM_ENV_NAME/bin/pip install ipykernel==5.5.3 ipython==7.31.1 ipython_genutils==0.2.0 jedi==0.17.2
RUN PATH=/opt/python/envs/$CUSTOM_ENV_NAME/bin/:$PATH Rscript -e "IRkernel::installspec(sys_prefix=TRUE)"
RUN /opt/datalore/build_code_insight_data.sh /opt/python/envs/$CUSTOM_ENV_NAME

Set up native R package support﻿

Set up native R package support